Browsing by Department 04.03. Department of Molecular Biology and Genetics

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Issue DateTitleAuthor(s)
Dec-2015High-copy overexpression screening reveals PDR5 as the main doxorubicin resistance gene in yeastDemir, Ayşe Banu; Koç, Ahmet 
2023High-fat diet feeding triggers a regenerative response in the adult zebrafish brainAzbazdar, Yağmur; Poyraz, Yusuf Kaan; Özalp, Özgün; Nazlı, Dilek; İpekgil, Doğaç; Cucun, GÖkhan; Özhan, Güneş 
1-Dec-2016High-throughput single nucleotide polymorphism (SNP) identification and mapping in the sesame (Sesamum indicum L.) genome with genotyping by sequencing (GBS) analysisUncu, Ayşe Özgür; Frary, Anne ; Karlovsky, Petr; Doğanlar, Sami 
2007HIV regülatör genlerini eksprese eden hücrelerin seçici olarak öldürülmesiArslanoğlu, Alper ; Yeğin, Zeynep
2021HologLev: A hybrid magnetic levitation platform integrated with lensless holographic microscopy for density-based cell analysisDelikoyun, Kerem ; Yaman, Sena ; Yılmaz, Esra; Sarıgil, Öykü ; Anıl İnevi, Müge ; Telli, Kübra; Yalçın Özuysal, Özden 
Feb-2005Homofermentative lactic acid bacteria of a traditional cheese, Comlek peyniri from Cappadocia regionBulut, Çisem; Güneş, Hatice ; Okuklu, Burcu ; Harsa, Hayriye Şebnem ; Kılıç, Sevda; Çoban, Hatice S.; Yenidünya, Ali Fazıl 
2011Hormona dirençli prostat kanseri hücrelerinde dosetaksel ve seramidin induklediği apoptozisde seramid genlerinin ve ürünlerinin eksprersyon düzeylerinin araştırılmasıBaran, Yusuf 
2012Hormones and the breast: Local and environmental interactionsBrisken, C.; Rajaram, R.; Ayyannan, A.; Beleut, M.; Yalçın, Özden 
2020Human immunodeficiency virus type-1 Tat protein induces secretory leukocyte protease inhibitor expression in African green monkey but not human cellsÖzdemir, Selçuk; Şengez, Burcu; Arslanoğlu, Alper 
May-2012Hyaluronidase 1 and ß-hexosaminidase have redundant functions in hyaluronan and chondroitin sulfate degradationGushulak, Lara; Hemming, Richard; Martin, Dianna; Seyrantepe, Volkan ; Pshezhetsky, Alexey; Triggs-Raine, Barbara
Apr-2008Identification and bioactivity of native strains of Bacillus thuringiensis from grain-related habitats in TurkeyApaydın, Özgür; Çınar, Çelenk; Turanlı, Ferit; Harsa, Hayriye Şebnem ; Güneş, Hatice 
Jul-2009Identification of a novel system for boron transport: Atr1 is a main boron exporter in yeastKaya, Alaattin; Karakaya, Hüseyin Çağlar ; Fomenko, Dmitri E.; Gladyshev, Vadim N.; Koç, Ahmet 
2019Identification of cytoplasmic sialidase NEU2-associated proteins by LC-MS/MSAkyıldız Demir, Seçil; Seyrantepe, Volkan 
Dec-2003Identification of differentially expressed genes in isogenic highly metastatic and poorly metastatic cell lines of R3230AC rat mammary adenocarcinomaGüneş, Hatice ; Carlsen, S. A.
2004Identification of extracellular enzyme producing alkalophilic bacilli from Izmir province by 16S-ITS rDNA RFLPAkbalık, Güney; Güneş, Hatice ; Yavuz, Elif ; Yaşa, İhsan; Harsa, Hayriye Şebnem ; Elmacı, Zehra Seda; Yenidünya, Ali Fazıl 
2004Identification of extracellular enzyme producing thermophilic bacilli from Balcova (Agamemnon) geothermal site by ITS rDNA RFLPYavuz, Elif ; Güneş, Hatice ; Harsa, Hayriye Şebnem ; Yenidünya, Ali Fazıl 
2008Identification of microRNAs involved in camptothecin-induced apoptosis in Jurkat T cell lineErdoğan, İpek 
Jun-2022Identification of novel arsenic resistance genes in yeastIşık, Esin; Balkan, Çiğdem; Karl, Vivien; Karakaya, Hüseyin Çağlar ; Hua, Sansan; Rauch, Sebastien; Tamás, Markus J; Koç, Ahmet 
2009Identification of potato Y potyvirus (PVY°) resistance in wild and cultivated tomatoesÇelebi Toprak, Fevziye; Barutçu, Eminur; Frary, Anne ; Doğanlar, Sami 
Feb-2012Identification of respiratory chain gene mutations that shorten replicative life span in yeastHacıoğlu, Elise; Demir, Ayşe Banu; Koç, Ahmet 
Nov-2018Identification of stable QTLs for fiber quality and plant structure in Upland cotton (G. hirsutum L.) under drought stressAkköse Baytar, Asena ; Peynircioğlu, Ceng; Sezener, Volkan; Basal, Hüseyin; Frary, Anne ; Frary, Amy; Doğanlar, Sami 
Sep-2005Identification of staphylococci by 16S internal transcribed spacer rRNA gene restriction fragment length polymorphismSudağıdan, Mert; Yenidünya, Ali Fazıl ; Güneş, Hatice 
2019IL-17, IL-21, and IL-22 cytokines of T helper 17 cells in cancerNalbant, Ayten 
2016IL12, IL10, IFN gamma and TNF alpha expression in human primary monocytes stimulated with bacterial heat shock GroEL (Hsp64) proteinNalbant, Ayten ; Saygılı, Tahsin
Mar-2011Imatinib induces autophagy through BECLIN-1 and ATG5 genes in chronic myeloid leukemia cellsCan, Geylani; Ekiz, Hüseyin Atakan ; Baran, Yusuf 
2009Imatinib induces autophagy through increasing the expression levels of Beclin-1 and ATG-5 genes in both parental sensitive and imatinib-resistant K562 cellsBaran, Yusuf ; Can, Geylani; Ekiz, Hüseyin Atakan ; Genç, S. G.
6-Dec-2011Imatinib-induced apoptosis: A possible link to topoisomerase enzyme inhibitionBaran, Yusuf ; Zencir, Sevil; Çakır, Zeynep; Öztürk, Esra; Topçu, Zeki
2013Immunologically detection of BCR/ABL fusion protein with flow cytometry in K562 chronic myeloid leukemia cells and comparison with RT-PCR resultsKozanoğlu, İlknur; Aygün, B.; Boğa, I.; Cansun, C.; Üstündağ, N.; Baran, Yusuf ; Özdoğu, Hakan
2016The impact of feature selection on one and two-class classification performance for plant microRNAsKhalifa, Waleed; Yousef, Malik; Saçar Demirci, Müşerref Duygu; Allmer, Jens 
Jan-2018The importance of boron in biological systemsUluışık, İrem; Karakaya, Hüseyin Çağlar ; Koç, Ahmet 
2016The importance of miRNA expressions in InfertiltyGökalp, S.; Akgül, Bünyamin ; Özçakır, T.; Vatansever, H. S.
2011The importance of protein profiling in the diagnosis and treatment of hematologic malignanciesŞanlı Mohamed, Gülşah ; Turan, Taylan; Ekiz, Hüseyin Atakan ; Baran, Yusuf 
2021Improved cell segmentation using deep learning in label-free optical microscopy imagesAyanzadeh, Aydın; Yalçın Özuysal, Özden ; Pesen Okvur, Devrim ; Önal, Sevgi; Töreyin, Behçet Uğur; Ünay, Devrim
2017Improving the quality of positive datasets for the establishment of machine learning models for pre-microRNA detectionSaçar Demirci, Müşerref Duygu; Allmer, Jens 
2015In silico analysis of simple sequence repeats (SSRs) in chloroplast genomes of Glycine speciesÖzyiğit, İbrahim İlker; Doğan, İlhan ; Filiz, Ertuğrul
2013In vitro antitumor activity of Sarcopoterium spinosum leaf extract with bioactive natural compoundsSüngüç, Ceren; Erdoğan, İpek ; Uslu, Mehmet Emin; Bayraktar, Oğuz 
2012Incorporation of Equisetum arvense extract into silk fibroin-hyaluronic acid sponge matrices for wound dressing applicationsUslu, Mehmet Emin; Erdoğan, İpek ; Bayraktar, Oğuz 
Jan-2006Incorporation of partially purified hen egg white lysozyme into zein films for antimicrobial food packagingMecitoğlu, Çiğdem; Yemenicioğlu, Ahmet ; Arslanoğlu, Alper ; Elmacı, Zehra Seda; Korel, Figen ; Çetin, Ali Emrah
2009Increasing de novo synthesis of ceramides increased nilotinib induced apoptosis in human MEG-01 chronic megacaryoblastic cellsBaran, Yusuf ; Gençer, Emel Başak; Ural, Ali Uğur; Avcu, Ferit
2009Increasing intracellular generation or accumulation of ceramides increased cytotoxic effects of resveratrol in human k562 chronic myeloid leukemia cellsKartal Yandım, Melis; Saydam, Güray; Şahin, Fahri; Baran, Yusuf 
Feb-2014Influence of aluminum on mineral nutrient uptake and accumulation in urtica Pilulifera L.Doğan, İlhan ; Özyiğit, İbrahim İlker; Demir, Göksel
2014Inhibition of jumonji C domain containing histone demethylases in acute myeloid leukemiaHastar, N.; Koca, D.; Baran, Yusuf 
Sep-2022An integrative-omics analysis of an industrial clavulanic acid-overproducing Streptomyces clavuligerusKurt Kızıldoğan, Aslıhan; Çelik, Gözde; Ünsaldı, Eser; Özcan, Servet; Ayaz Güner, Şerife ; Özcengiz, Gülay
Jun-2022Interaction with fungi promotes the accumulation of specific defense molecules in orchid tubers and may increase the value of tubers for biotechnological and medicinal applications: The case study of interaction between Dactylorhiza sp. and Tulasnella calosporaHampejsová, Romana; Berka, Miroslav; Berková, Veronika; Jersáková, Jana; Domkářová, Jaroslava; von Rundstedt, Friederike; Frary, Anne ; Saiz-Fernández, Iñigo; Brzobohatý, Břetislav; Černý, Martin
2023Interferon gamma-inducible NAMPT in melanoma cells serves as a mechanism of resistance to enhance tumor growthBarba, Cindy; Ekiz, Hüseyin Atakan ; Tang, William Weihao; Ghazaryan, Arevik; Hansen, Mason; Lee, Soh-Hyun; Voth, Warren Peter
Sep-2014Intersection of MicroRNA and gene regulatory networks and their implication in cancerYousef, Malik; Trinh, Hung V.; Allmer, Jens 
2018Intracytoplasmic re-localization of miRISC complexesAkgül, Bünyamin ; Erdoğan, İpek 
Jan-2017Intraperitoneal mesenchymal stem cell administration ameliorates allergic rhinitis in the murine modelIşık, Sakine; Karaman, Meral; Adan, Aysun ; Kıray, Müge; Bağrıyanık, Hüsnü Alper; Çağlayan Sözmen, Şule; Kozanoğlu, İlknur; Karaman, Özkan; Baran, Yusuf ; Uzuner, Nevin
2014Invadopodia: Proteolytic feet of cancer cellsBatı, Gizem; Pesen Okvur, Devrim 
2023Investigating the efficacy of combined ketogenic diet and anti-inflammatory therapy in a mouse model of early-onset Tay-Sachs diseaseinci, Orhan Kerim; Seyrantepe, Volkan 
Jul-2022Investigating the potential therapeutic role of targeting STAT3 for overcoming drug resistance by regulating energy metabolism in chronic myeloid leukemia cellsTezcanlı Kaymaz, Burçin; Günel, Nur Selvi; Söğütlü, Fatma; Özateş Ay, Neslihan Pınar; Baran, Yusuf ; Gündüz, Cumhur; Biray Avcı, Çığır
2017Investigating the role of connexin 32 in cell cycle, cell viability and epithelial to mesenchymal transition of normal breast and breast cancer cellsAdak, Aslı; Özçivici, Engin ; Meşe, Gülistan 
2013Investigation of anti-tumoral activity of Cistus creticus extract against PC-3 cell lineErdoğan, İpek ; Süngüç, Ceren; Uslu, Mehmet Emin; Bayraktar, Oğuz 
Dec-2018Investigation of autophagy related markers in brain tissue of early-onset tay-sachs disease mouse modelsAteş, Nurselin 
2014Investigation of effects of fisetin, vitexin and hesperetin on chronic myeloid leukemia cellsAdan Gökbulut, Aysun ; Baran, Yusuf 
Mar-2022Investigation of interactions of doxorubicin with purine nucleobases by molecular modelingAkdeniz, Esra Şahin ; Selçuki, Cenk
2019Investigation of potential anticarcinogenic effects of corilagin in lung cancer cellsRencüzoğulları, Çağla; Çinçin, Zeynep Birsu; İplik, Elif Sinem; Baran, Yusuf ; Çakmakoğlu, Bedia
10-Jul-2015IRF6 is involved in the regulation of cell proliferation and transformation in MCF10A cells downstream of notch signalingZengin, Talip; Ekinci, Burcu; Küçükköse, Cansu; Yalçın Özuysal, Özden 
2014IRF6'nın notch yolağının hücre bölünmesini engelleyici yada uyarıcı etkilerindeki belirleyici rolünün araştırılmasıYalçın Özuysal, Özden 
Apr-2005Isolation and characterization of Bacillus thuringiensis strains from different grain habitats in TurkeyApaydın, Özgür; Yenidünya, Ali Fazıl ; Harsa, Hayriye Şebnem ; Güneş, Hatice 
Feb-2008Isolation and characterization of Bacillus thuringiensis strains from olive-related habitats in TurkeyÇınar, Çelenk; Apaydın, Özgür; Yenidünya, Ali Fazıl ; Harsa, Hayriye Şebnem ; Güneş, Hatice 
2009Isolation and identification of a lipase producing psychrotrophic bacteria from soil: Cloning and partial characterization of its lipaseAdan, Aysun 
2018İlaç taşıma sistemleri olarak nanopartiküller kullanılarak pasif ve aktif tümör hedeflemelerinin karşılaştırmalı incelenmesiDağlıoğlu, Cenk 
2020İnsan kolon kanseri hücrelerine karşı inorganik nanopartikül-temelli ilaç taşıyıcı sistemlerin kullanılması: Partikül büyüklüğünün antikanser aktivitesine etkisiDağlıoğlu, Cenk 
2016İnsanda apoptozu düzenleyen uzun kodlamayan RNA’ların belirlenmesi ve fonksiyonel karakterizasyonuAkgül, Bünyamin 
2004İzogenik adenokarsinoma hücre hatlarında farklı olarak ifade edilen genlerin metastatik ilişkilerinin araştırılmasıGüneş, Hatice ; Certel, Seçil; Sudağıdan, Mert
2014JAK/STAT Signalling pathway genes in the regulation of tyrosine kinase inhibitors induced and clinical process in chronic myeloid leukemia patientsKiraz, Yağmur ; Kartal Yandım, Melis; Kozanoğlu, İlknur; Özdoğu, Hakan; Pişkin, I.; Özcan, Mehmet Ali; Saydam, Göksel; Şahin, Fahri; Avcu, Ferit; Ural, Ali Uğur; Ünal, Ali; Baran, Yusuf 
2015Keratitis-Ichthyosis-Deafness syndrome associated mutations impair the localization and functions of Connexin 26Aypek, Hande; Meşe, Gülistan 
Dec-2022Knockdown of death receptor 5 antisense long noncoding RNA and cisplatin treatment modulate similar macromolecular and metabolic changes in HeLa cellsGürer, Dilek Cansu; Erdoğan Vatansever, İpek ; Ceylan, Çağatay ; Akgül, Bünyamin 
2019La médecine de précision en oncologie: challenges, enjeux et nouveaux paradigmesCox, Stephanie; Rousseau-Tsangaris, Marina; Abou-Zeid, Nancy; Dalle, Stephane; Leurent, Pierre; Cutivet, Arnaud; Baran, Yusuf 
Apr-2019Label-free density-based detection of adipocytes of bone marrow origin using magnetic levitationSarıgil, Öykü ; Anıl İnevi, Müge ; Yılmaz, Esra; Meşe, Gülistan ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
2009Label-free quantitation with 2DBAllmer, Jens 
Apr-2010Label-free quantitation, an extension to 2DBAllmer, Jens 
2008Laktik asit bakterileri, lisozim ve laktoperoksidaz kullanılarak antimikrobiyal özellik taşıyan yenebilir filmlerin geliştirilmesi, plastik ambalaj materyallerine ve çeşitli gıdalara uygulanmasıKorel, Figen ; Yemnicioğlu, Ahmet; Altınkaya, Sacide Alsoy ; Arslanoğlu, Alper 
2023LC-ESI-MS/MS analysis of secondary metabolites of different St. John's wort (Hypericum perforatum) extracts used as food supplements and evaluation of developmental toxicity on zebrafish (Danio rerio) embryos and larvaeAtalar, Mehmet Nuri; Köktürk, Mine; Altındağ, Fikret; Özhan, Güneş ; Özen, Tevfik; Demirtaş, İbrahim; Gülçin, İlhami
2022Lessons from a ten-year-long journey: building a student-driven computational biology society across TurkeyKaya, Yasin; Karakulak, Tülay; Saylan, Cemil Can; Gür, E. Ravza; Tatlıdil, Engin ; Güleşen, Sevilay; Betül Dinçaslan, Fatma; Dönertaş, Handan Melike
2005Ligand kütüphanelerinin yapımında kullanılacak yeni konukçu E. coli suşlarının geliştirilmesiYenidünya, Ali Fazıl ; Elmacı, Zehra Seda; Arslanoğlu, Alper 
28-May-2015Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cellsAlural, Begüm; Özerdem, Ayşegül; Allmer, Jens ; Genç, Kürşad; Genç, Şermin
2015Lizozomal Neu1 ve Neu4 sialidazın yağ metabolizmasındaki biyolojik rolü: Lipidom analiziSeyrantepe, Volkan 
2023Long noncoding RNAs in human cancer and apoptosisErdoğan, İpek ; Sweef, Osama; Akgül, Bünyamin 
2020Low magnitude high frequency vibrations expedite the osteogenesis of bone marrow stem cells on paper based 3D scaffoldsKaradaş, Özge; Meşe, Gülistan ; Özçivici, Engin 
Feb-2017Low-intensity vibrations normalize adipogenesis-induced morphological and molecular changes of adult mesenchymal stem cellsBaskan, Öznur ; Meşe, Gülistan ; Özçivici, Engin 
2016Lysosomal Cathepsin A plays a significant role in the processing of endogenous bioactive peptidesTimur, Zehra Kevser ; Akyıldız Demir, Seçil; Seyrantepe, Volkan 
2016A machine learning approach for MicroRNA precursor prediction in retro-transcribing virus genomesSaçar Demirci, Müşerref Duygu; Toprak, Mustafa; Allmer, Jens 
2014Machine learning methods for microRNA gene predictionSaçar, Müşerref Duygu; Allmer, Jens 
Aug-2012Macromolecular changes in nilotinib resistant k562 cells; An in vitro study by fourier transform infrared spectroscopyCeylan, Çağatay ; Camgöz, Aylin; Baran, Yusuf 
2021Magnetic levitation assisted biofabrication, culture, and manipulation of 3D cellular structures using a ring magnet based setupAnıl İnevi, Müge ; Delikoyun, Kerem ; Meşe Özçivici, Gülistan ; Tekin, Hüseyin Cumhur ; Özçivici, Engin 
2020Magnetic levitation-based adipose tissue engineering using horizontal magnet deploymentSarıgil, Öykü ; Anıl İnevi, Müge ; Yılmaz, Esra; Özçelik, Özge; Meşe, Gülistan ; Tekin, H. Cumhur 
Jul-2016Major apoptotic mechanisms and genes involved in apoptosisKiraz, Yağmur ; Adan, Aysun ; Kartal Yandım, Melis; Baran, Yusuf 
2020Mapping of quantitative trait loci for antioxidant molecules in tomato fruit: Carotenoids, vitamins C and E, glutathione and phenolic acidsGürbüz Çolak, Nergiz ; Tek, Neslihan ; Ülger, Mehmet; Frary, Anne ; Doğanlar, Sami 
Jun-2023Mapping of quantitative trait loci for the nutritional value of fresh market tomatoGürbüz Çolak, Nergiz ; Tek Eken, Neslihan ; Ülger, Mehmet; Frary, Anne ; Doğanlar, Sami 
Nov-2002Mapping quantitative trait loci in inbred backcross lines of Lycopersicon pimpinellifolium (LA1589)Doğanlar, Sami ; Frary, Anne ; Ku, Hsin-mei; Tanksley, Steven D.
2014Mass spectrometry and thin layer chromatography analysis of brain gangliosides in Tay-Sachs disease mouse modelsSeyrantepe, Volkan ; Timur, Zehra; Marsching, C.; Sandhoff, Roger
2014Master regulators of posttranscriptional gene expression are subject to regulationHamid, Syed Muhammad; Akgül, Bünyamin 
2011Mayada bor dirençliği sağlayan genlerin bitki homologlarının fonksiyonel analiziKarakaya, Hüseyin Çağlar ; Arslanoğlu, Alper 
2007Mechanisms of cellular resistance to imatinib in human chronic myeloid leukemia cellsBaran, Yusuf ; Ural, Ali Uğur; Gündüz, Ufuk
Jun-2013Mechanisms responsible for nilotinib resistance in human chronic myeloid leukemia cells and reversal of resistanceCamgöz, Aylin; Gençer, Emel Başak; Ural, Ali Uğur; Baran, Yusuf 
2015Mekanik titreşimlerin meme kanseri hücrelerinin davranışlarına etkisiÖzçivici, Engin ; Yalçın Özuysal, Özden 
2015Mesenchymal stem cells administered intraperitoneally have a potent effects on the experimental allergic airway diseaseIşık, S.; Adan, Aysun ; Karaman, M.; Kiray, M.; Bağrıyanık, H. A.; Çağlayan-Sözmen, S.; Uzuner, N.; Baran, Yusuf 
Aug-2011Mesenchymal stem cells ameliorate the histopathological changes in a murine model of chronic asthmaFırıncı, Fatih; Karaman, Meral; Baran, Yusuf ; Bağrıyanık, Alper; Arıkan Ayyıldız, Zeynep; Kiray, Müge; Kozanoglu, İlknur; Yılmaz, Osman; Uzuner, Nevin; Karaman, Özkan