Please use this identifier to cite or link to this item: https://hdl.handle.net/11147/7082
Title: The expressed MicroRNA-mRNA interactions of Toxoplasma gondii
Authors: Acar, İlhan Erkin
Saçar Demirci, Müşerref Duygu
Groß, Uwe
Allmer, Jens
Acar, İlhan Erkin
Saçar Demirci, Müşerref Duygu
Allmer, Jens
Izmir Institute of Technology. Molecular Biology and Genetics
Keywords: Differential expression
Expression analysis
MicroRNAs
MiRNA target
Toxoplasma gondii
Issue Date: Jan-2018
Publisher: Frontiers Media S.A.
Source: Acar, İ. E., Saçar Demirci, M. D., Groß, U., and Allmer, J. (2018). The expressed MicroRNA-mRNA interactions of Toxoplasma gondii. Frontiers in Microbiology, 8(JAN). doi:10.3389/fmicb.2017.02630
Abstract: MicroRNAs (miRNAs) are involved in post-transcriptional modulation of gene expression and thereby have a large influence on the resulting phenotype. We have previously shown that miRNAs may be involved in the communication between Toxoplasma gondii and its hosts and further confirmed a number of proposed specific miRNAs. Yet, little is known about the internal regulation via miRNAs in T. gondii. Therefore, we predicted pre-miRNAs directly from the type II ME49 genome and filtered them. For the confident hairpins, we predicted the location of the mature miRNAs and established their target genes. To add further confidence, we evaluated whether the hairpins and their targets were co-expressed. Such co-expressed miRNA and target pairs define a functional interaction. We extracted all such functional interactions and analyzed their differential expression among strains of all three clonal lineages (RH, PLK, and CTG) and between the two stages present in the intermediate host (tachyzoites and bradyzoites). Overall, we found ~65,000 expressed interactions of which ~5,500 are differentially expressed among strains but none are significantly differentially expressed between developmental stages. Since miRNAs and target decoys can be used as therapeutics we believe that the list of interactions we provide will lead to novel approaches in the treatment of toxoplasmosis.
URI: https://doi.org/10.3389/fmicb.2017.02630
http://hdl.handle.net/11147/7082
ISSN: 1664-302X
Appears in Collections:Molecular Biology and Genetics / Moleküler Biyoloji ve Genetik
PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection
Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection

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