Please use this identifier to cite or link to this item: https://hdl.handle.net/11147/12213
Title: Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Gossypium hirsutum L.)
Authors: Akköse Baytar, Asena
Peynircioğlu, Ceng
Sezener, Volkan
Frary, Anne
Doğanlar, Sami
Izmir Institute of Technology
Özaltın Agricultural Enterprises Industry and Commerce
Nazilli Cotton Research Institute
Izmir Institute of Technology
Izmir Institute of Technology
Keywords: Association mapping
Cold stress tolerance
Gossypium hirsutum L.
Simple sequence repeats (SSRs)
Issue Date: May-2022
Publisher: Springer
Abstract: Cotton originated from ancestors in the Gossypium genus that grew in semi-desert habitats. As a result, it is adversely affected by low temperatures especially during germination and the first weeks of growth. Despite this, there are relatively few molecular studies on cold stress in cotton. This limitation may present a future breeding handicap, as recent years have witnessed increased low temperature damage to cotton production. Cold tolerance is a sustainable approach to obtain good production in case of extreme cold. In the present study, 110 Upland cotton (Gossypium hirsutum) genotypes were evaluated for cold tolerance at the germination stage. We identified vigorous genotypes with cold-related parameters that outperformed the panel’s average performance (x¯ = 76.9% CG, 83.9% CSI, 167.5 CWVI). Molecular genetic diversity analysis with 101 simple sequence repeat (SSR) markers yielding 416 loci was used to select tolerant genotypes that could be important materials for breeding this trait. A total of 16 marker-cold tolerance trait associations (p < 0.005) were identified with 10 of them having major effects (PVE > 10%). Based on the positions of these markers, candidate genes for cold tolerance in the G. hirsutum genome were identified. Three of these markers (BNL0569, CIR081 and CIR202) are important candidates for use in marker-assisted breeding for cold tolerance because they mapped to genes previously associated with cold tolerance in other plant species such as Arabidopsis thaliana, rice and tomato.
Description: This work was supported by a research grant (317O179) from The Scientific and Technological Research Council of Turkey
URI: https://doi.org/10.1007/s12298-022-01184-6
https://hdl.handle.net/11147/12213
Appears in Collections:Molecular Biology and Genetics / Moleküler Biyoloji ve Genetik
PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection
Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection

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