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https://hdl.handle.net/11147/9567
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DC Field | Value | Language |
---|---|---|
dc.contributor.author | Akyıldız Demir, Seçil | - |
dc.contributor.author | Seyrantepe, Volkan | - |
dc.date.accessioned | 2020-07-25T22:16:56Z | - |
dc.date.available | 2020-07-25T22:16:56Z | - |
dc.date.issued | 2019 | - |
dc.identifier.issn | 0250-4685 | - |
dc.identifier.issn | 1303-829X | - |
dc.identifier.uri | https://doi.org/10.1515/tjb-2018-0089 | - |
dc.identifier.uri | https://hdl.handle.net/11147/9567 | - |
dc.description.abstract | Background: Cytoplasmic sialidase (NEU2) plays an active role in removing sialic acids from oligosaccharides, gly-copeptides, and gangliosides in mammalian cells. NEU2 is involved in various cellular events, including cancer metabolism, neuronal and myoblast differentiation, proliferation, and hypertrophy. However, NEU2-interacting protein(s) within the cell have not been identified yet. Objective: The aim of this study is to investigate NEU2 interacting proteins using two-step affinity purification (TAP) strategy combined with mass spectrometry analysis. Methods: In this study, NEU2 gene was cloned into the pCTAP expression vector and transiently transfected to COS-7 cells by using PEI. The most efficient expression time of NEU2- tag protein was determined by real-time PCR and Western blot analysis. NEU2-interacting protein(s) were investigated by using TAP strategy combined with two different mass spectrometry experiment; LC-MS/MS and MALDI TOF/TOF. Results: Here, mass spectrometry analysis showed four proteins; a-actin, beta-actin, calmodulin and histone H1.2 proteins are associated with NEU2. The interactions between NEU2 and actin filaments were verified by Western blot analysis and immunofluorescence analysis. Conclusions: Our study suggests that association of NEU2 with actin filaments and other protein(s) could be important for understanding the biological role of NEU2 in mammalian cells. | en_US |
dc.language.iso | en | en_US |
dc.publisher | Türk Biyokimya Derneği | en_US |
dc.relation.ispartof | Turkish Journal of Biochemistry | en_US |
dc.rights | info:eu-repo/semantics/closedAccess | en_US |
dc.subject | Sialidase | en_US |
dc.subject | NEU2 | en_US |
dc.subject | Actin | en_US |
dc.subject | Calmodulin | en_US |
dc.subject | Streptavidin | en_US |
dc.title | Identification of cytoplasmic sialidase NEU2-associated proteins by LC-MS/MS | en_US |
dc.title.alternative | Sitoplazmik sialidaz NEU2 ile ilişkili proteinlerin LC-MS/MS ile tanımlanması | - |
dc.type | Article | en_US |
dc.institutionauthor | Demir, Seçil Akyıldız | - |
dc.institutionauthor | Seyrantepe, Volkan | - |
dc.department | İzmir Institute of Technology. Molecular Biology and Genetics | en_US |
dc.identifier.volume | 44 | en_US |
dc.identifier.issue | 4 | en_US |
dc.identifier.startpage | 462 | en_US |
dc.identifier.endpage | 472 | en_US |
dc.identifier.wos | WOS:000489303900006 | en_US |
dc.identifier.scopus | 2-s2.0-85073574385 | en_US |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | en_US |
dc.identifier.doi | 10.1515/tjb-2018-0089 | - |
dc.relation.doi | 10.1515/tjb-2018-0089 | en_US |
dc.coverage.doi | 10.1515/tjb-2018-0089 | en_US |
dc.identifier.trdizinid | 340492 | en_US |
dc.identifier.wosquality | Q4 | - |
dc.identifier.scopusquality | Q4 | - |
item.fulltext | With Fulltext | - |
item.grantfulltext | open | - |
item.languageiso639-1 | en | - |
item.openairecristype | http://purl.org/coar/resource_type/c_18cf | - |
item.cerifentitytype | Publications | - |
item.openairetype | Article | - |
crisitem.author.dept | 04.03. Department of Molecular Biology and Genetics | - |
Appears in Collections: | Molecular Biology and Genetics / Moleküler Biyoloji ve Genetik Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection TR Dizin İndeksli Yayınlar / TR Dizin Indexed Publications Collection WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection |
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File | Size | Format | |
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akyildizdemir2018.pdf | 2.6 MB | Adobe PDF | View/Open |
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