06. İYTE Araştırma Merkezleri / IZTECH Research Centers
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Browsing 06. İYTE Araştırma Merkezleri / IZTECH Research Centers by Department "İzmir Institute of Technology. Bioengineering"
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Article Citation - WoS: 3Citation - Scopus: 3Effects of Different Lipopolysaccharide Preparations on Neutrophil Function in the Fathead Minnow, Pimephales Promelas Rafinesque(John Wiley and Sons Inc., 2011-11) Jovanovic, B.; Baran, Ezgi; Goetz, F. W.; Palic, D.; 01. Izmir Institute of TechnologyThe fish innate immune response to pathogensrelies on the adequate function of neu trophilicgranulocytes (Palic´, Andreasen, Herolt, Menzel &Roth 2006). The ability of neutrophils to phago-cytose microor ganisms and cellular debris is essen-tial for normal development an d survival of animalpopulations (Segal 2005). The evaluation of neu-trophil function is valuable for assessing the healthstatus of individuals and fish populations (Smith &Lumsden 1983). Resistance of fishes to septic shockand tolerance to high concentrations of lipopoly-saccharide (LPS) was observed as a major differencebetween mammalian and fish innate immuneresponses (Berczi, Bertok & Bereznai 1966). Thisfunctional difference could be attri buted to severalcostimulatory molecules and intracellular mediatorsbeing absent in fish, but active in mammals duringresponse to LPS stimulation (Iliev, Roach, Mac-kenzie, Planas & Goetz 2005). Most fish do notpossess a Toll-like receptor (TLR) with sequencesimilarity to mammalian TLR4 (Leulier & Lemai-tre 2008) and the ones that do have no ability forTLR4 downstream signalling (Sepulcre, Alcaraz-Perez, Lopez-Munoz, Roca, Meseguer, Cayuela &Mulero 2009). Regardless of the absence andfunctionality of TLR4 and costimulatory molecules,bacterial LPS can induce a robus t inflammatorygene response in innate immune fish cells, but atconcentrations 1000-fold higher than is commonlyobserved in mammalian species ( lgmL)1vs.ng mL)1) (Palic´, Ostojic, Andreasen & Roth2007; Mackenzie, Roher, Boltan˜a & Goetz 2010).In contrast, ultrapure LPS preparations are rela-tively inactive in fish (Iliev et al. 2005).Article Citation - WoS: 1Citation - Scopus: 2Induction of Triploidy in Melicertus Kerathurus (forskal, 1775) With Temperature Shock(John Wiley and Sons Inc., 2016-01) Kır, Mehmet; Şahan, Ali Kemal; Okur, Özgür; 01. Izmir Institute of TechnologyTriploidy in fertilized eggs of Melicertus kerathurus was induced by cold (8, 10, 12°C) and heat (34, 36, 38°C) shock for different duration times (2, 4 and 8 min) after 10 min of post spawning. The best individual treatment produced 64.5% triploid nauplii in cold shock application at a temperature of 10°C for a duration of 8 min. Temperature did not have significant effect (P > 0.05) on triploid rate but duration time had a significant effect (P < 0.05) for individual cold or heat shock. This study demonstrates that because of a wide variety of effective parameters, it is essential to optimize shock conditions for each species strain at each location. © 2016 John Wiley & Sons Ltd.Article Citation - Scopus: 1Prognostic Significance of the Igvh Mutation Status and Immunohistochemical Analysis of Zap70 and Cd38 in Bone Marrow Biopsies in Chronic Lymphocytic Leukemia(Türkiye Klinikleri Journal of Medical Sciences, 2014) Kahraman Çetin, Nesibe; Kaçar Döger, Füruzan; Kurtgöz, Serkan Erkan; Rusçuklu, Dane; Yavaşoğlu, İrfan; 01. Izmir Institute of TechnologyObjective: Chronic lymphocytic leukemia (CLL) is one of the most common leukemia type among adults in the industrialized countries. Due to the nature of CLL, it is important to recognize patients with a more rapid course of disease. The goal of our study was to study ZAP70 and CD38 antibodies along with immunglobulin heavy chain variable region (IgVH) mutation status, which have been associated with rapid progression and aggressive clinical course in CLL, and to correlate the expression of these molecules with patterns of bone marrow infiltration. Material and Methods: We included 84 bone marrow biopsy samples into the study to determine ZAP70 and CD38 status using immunohistochemistry. Expression patterns for both antibodies were then correlated with the bone marrow infiltration patterns. We also analyzed IgVH mutations in 20 patients using DNA obtained from paraffin-embedded formalin-fixed bone marrow biopsies. These findings were then correlated with immunohistochemical results. Results: We identified a positive correlation between the expression patterns of ZAP70 and CD38, factors that were previously identified as poor prognostic factors (p<0.001). However, there was no correlation between these two markers and IgVH mutation status (p=1.000 and p=0.931). In addition, we showed a statistically significant positive correlation with ZAP70 immunostaining, and the necessity for an early intervention (p=0.046). ZAP70 and CD38 expressions were statistically significantly correlated with the diffuse pattern infiltration of bone marrow (p<0.001 and p<0.001, respectively). Conclusion: Despite small number of our patients, the findings of our study suggested that ZAP70 and CD38 expression patterns as well as IgVH mutation status might be helpful to determine the course of the disease, and the risk of progression. Particularly ZAP70 immunopositive patients appear to have a faster disease progression, and may require earlier intervention and a closer follow up.Article Citation - WoS: 20Citation - Scopus: 20Screening Virulence Properties of Staphylococci Isolated From Meat and Meat Products(B W K Public Relations, 2009) Sudağıdan, Mert; Aydın, A.; 01. Izmir Institute of TechnologyVirulence properties (biofilm formation, antibiotic susceptibility, production of extracellular enzymes and the presence of toxin genes) of staphylococci isolated from various meat and meat products were investigated. 22 Staphylococcus spp. (S. aureus n = 9, S. haemolytlcus n = 4, S. cohnii n = 3, S. saprophytics n = 3, S. hominis n = 1, S. simulans n = 1 and S. warneri n = 1) were isolated from 120 meat and meat product samples. 10 strains were biofilmformers. Although none of the strains was resistant to vancomycin, oxacillin, teicoplanin, ofloxacin and gentamicin, 8 strains were found to be resistant to penicillin and one strain was found to be resistant to erythromycin. In addition, all strains were negative for the mecA PCR. 8 strains showed lipolytic activity against Tween 80,10 strains against Tween 20, and 18 strains against tributyrin. Moreover, 9 strains showed proteolytic activity against casein, 11 strains against milk and 17 strains against skim milk containing media. Mostly S. aureus strains showed positive results for icaA-SA, nuc, geh, sspA, sspB, aur, serine protease gene, hla, hlb, set1, and etb. However, 7 of coagulase-negative staphylococci strains were found to carry see gene. As both prevalence and concentration of this bacterium were low, and no isolate contained all virulence factors, it is concluded that common hygiene and process control measures should be sufficient to control meatborne staphylococcal intoxication.Article Theoretical aspects of some 4-[2,6 derivatives as anti-hiv agents(Akademiai Kiado, 2000) Türker, Lemi; Sudağıdan, Mert; 01. Izmir Institute of TechnologySome (-)-(1S,4R) -4-[2-amino-6-(substituted)-9H-purin-9-yl]-2-cyclopentene-1-methanol derivatives have been considered for semiempirical treatment at the level of AM1 type calculations. Certain theoretical structure-activity relationship were investigated. © 2000 Akadémiai Kiadó,.Article Citation - WoS: 1Citation - Scopus: 1Triploid Induction of Green Tiger Shrimp, Penaeus Semisulcatus (de Haan, 1844) Using Temperature and Chemical Shock(John Wiley and Sons Inc., 2015-12) Kır, Mehmet; Tarhan, Gökhan; Okur, Özgür; 01. Izmir Institute of TechnologyTriploidy in fertilized eggs of Penaeus semisulcatus was induced by temperature and chemical shocks. The eggs, which were obtained from the shrimp broodstock maintained at 29C, were exposed to cold temperature (8, 10, 12, and 14 C) and 6-dimetiloaminopurine (6-DMAP) concentrations (100, 150, 200, and 250 μM) for different durations (4, 6, and 8min) 9min after spawning was detected. While the highest triploidy rate of 49.7±4.5% was obtained with a 200μM 6-DMAP concentration for a duration of 8min, the best mean triploidy rate of 45.5±2.8% for cold shock was obtained at a temperature of 10 C for a duration of 8min. Temperature and 6-DMAP concentration did not have significant effect on triploidy rate (P>0.05) but shock duration had significant effect on triploidy rate for individual cold temperature shock or 6-DMAP chemical shock (P<0.05). Although longer durations of shock agent increased the rates of triploid induction, they generally had an adverse effect on hatching rates in the study.