Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
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Conference Object Citation - WoS: 13Citation - Scopus: 22The Arrows Project: Robotic Technologies for Underwater Archaeology(IOP Publishing Ltd., 2018-06) Allotta, Benedetto; Costanzi, Riccardo; Ridolfi, Alessandro; Salvetti, Ovidio; Reggiannini, Marco; Kruusmaa, Maarja; Salumäe, Taavi; Lane, David Mike; Frost, Gordon; Tsiogkas, Nikolaos; Cocco, Michele; Gualdesi, Lavinio; Lacava, Giovanni; Roig, Daniel; Gündoğdu, Hilal Tolasa; Dede, Mehmet İsmet Can; Baines, Steven; Tusa, Sebastiano; Latti, Priit; Scaradozzi, DavidThe paper summarizes the main results achieved during the three-year European FP7 ARROWS project (ARchaeological RObot systems for the Worlds Seas). ARROWS concluded at the end of August 2015 and proposed to adapt and develop low-cost Autonomous Underwater Vehicle (AUV) technologies to reduce the operational cost of typical underwater archaeological campaigns. The methodology used by ARROWS researchers identified archaeologists requirements for all the phases of a campaign. These were based on guidelines issued by the project Archaeology Advisory Group (AAG), which comprised of many European archaeologists belonging to the consortium. One of the main goals of the ARROWS project was the development of a heterogeneous team of cooperating AUVs; these comprised of prototypes developed in the project and commercially available vehicles. Three different AUVs have been built and tested at sea: MARTA, characterized by flexible hardware modularity for easy adaption of payload and propulsion systems, U-CAT, a turtle inspired bio-mimetic robot devoted to shipwreck penetration and A-Size AUV, a small light weight vehicle which is easily deployable by a single person. The project also included the development of a cleaning tool for well-known artefacts and maintenance operations. Results from the official final demonstrations of the project, held in Sicily and in Estonia during Summer 2015, are presented in the paper as an experimental proof of the validity of the developed robotic tools.Article Citation - WoS: 76Citation - Scopus: 80Azimuthal Anisotropy of Charged Particles With Transverse Momentum Up To 100 Gev/C in Pbpb Collisions at ?snn=5.02 Tev(Elsevier Ltd., 2018-01) CMS Collaboration; Karapınar, GülerThe Fourier coefficients v2 and v3 characterizing the anisotropy of the azimuthal distribution of charged particles produced in PbPb collisions at sNN=5.02 TeV are measured with data collected by the CMS experiment. The measurements cover a broad transverse momentum range, 110 GeV/c range, where anisotropic azimuthal distributions should reflect the path-length dependence of parton energy loss in the created medium. Results are presented in several bins of PbPb collision centrality, spanning the 60% most central events. The v2 coefficient is measured with the scalar product and the multiparticle cumulant methods, which have different sensitivities to initial-state fluctuations. The values from both methods remain positive up to pT∼60–80 GeV/c, in all examined centrality classes. The v3 coefficient, only measured with the scalar product method, tends to zero for pT≳20 GeV/c. Comparisons between theoretical calculations and data provide new constraints on the path-length dependence of parton energy loss in heavy ion collisions and highlight the importance of the initial-state fluctuations.Article Citation - WoS: 76Citation - Scopus: 90Biofabrication of in Situ Self Assembled 3d Cell Cultures in a Weightlessness Environment Generated Using Magnetic Levitation(Nature Publishing Group, 2018-12) Anıl İnevi, Müge; Yaman, Sena; Arslan Yıldız, Ahu; Meşe, Gülistan; Yalçın Özuysal, Özden; Tekin, Hüseyin Cumhur; Özçivici, EnginMagnetic levitation though negative magnetophoresis is a novel technology to simulate weightlessness and has recently found applications in material and biological sciences. Yet little is known about the ability of the magnetic levitation system to facilitate biofabrication of in situ three dimensional (3D) cellular structures. Here, we optimized a magnetic levitation though negative magnetophoresis protocol appropriate for long term levitated cell culture and developed an in situ 3D cellular assembly model with controlled cluster size and cellular pattern under simulated weightlessness. The developed strategy outlines a potential basis for the study of weightlessness on 3D living structures and with the opportunity for real-time imaging that is not possible with current ground-based simulated weightlessness techniques. The low-cost technique presented here may offer a wide range of biomedical applications in several research fields, including mechanobiology, drug discovery and developmental biology.Article Citation - WoS: 2Citation - Scopus: 3Can Tube Tunnel Crossings Relieve Urban Congestion Problems? Izmir Tube Tunnel Project Proposal Under Scrutiny(MDPI Multidisciplinary Digital Publishing Institute, 2019-05) Duvarcı, Yavuz; Yiğitcanlar, TanBuilding underwater tube tunnel crossings to ease the urban congestion problems has become a popular approach for many cities across the globe. London, New York, Istanbul, Hamburg, Sydney and Brisbane are among these cities. However, the effectiveness and externalities of these expensive mega urban infrastructures have also been questioned widely among urban, transport and environmental planning scholars. Given the international popularity of the topic, this study places a new tube tunnel crossings project from Izmir, Turkey under the microscope. In this heuristic simulation study, policy-on scenarios were tested to determine possible impacts of the underwater tube tunnel-crossing project. The traffic impacts are discussed using simulations assigning the initial origin-destination data. The results of the study revealed that, given the two locations, outer and inner locations over the dagger-shape bay, the capacity increments on the bridge links and the links around the periphery highway did not bring any effective solutions beyond some minor improvements. The findings disclosed that the ineffectiveness of the tube tunnel crossing might be due to the excessive congestion happening all over the downtown area, which clogs the passageways to the bridge. The paper highlights the limitations of the tube tunnel-crossing project, emphasises the need for comprehensive investigations before committing to the project and advocates the emphasis to be actually given for sustainable mobility.Article Citation - Scopus: 34Combination of Akt Inhibitor Arq 092 and Sorafenib Potentiates Inhibition of Tumor Progression in Cirrhotic Rat Model of Hepatocellular Carcinoma(Impact Journals, 2018) Macek Jilkova, Zuzana; Zeybek Kuyucu, Ayça; Kurma, Keerthi; Tayébéh, Séyédéh; Pour, Ahmad; Roth, Gaël S.; Abbadessa, Giovanni; Yu, Yi; Schwartz, Brian; Sturm, Nathalie; Marche, Patrice N.; Hainaut, Pierre; Decaens, ThomasThe prognosis of patients with advanced hepatocellular carcinoma (HCC) is very poor. The AKT pathway is activated in almost half of HCC cases and in addition, long term exposure to conventional drug treatment of HCC, sorafenib, often results in overactivation of AKT, leading to HCC resistance. Therefore, it is important to assess the safety and the efficacy of selective allosteric AKT inhibitor ARQ 092 (Miransertib) in combination with sorafenib. Here, we demonstrated in vitro that the combination of ARQ 092 with sorafenib synergistically suppressed proliferation, promoted apoptosis, and reduced migration. To test the effect of the combination in vivo, rats with diethylnitrosamine-induced cirrhosis and fully developed HCC were randomized and treated with vehicle, sorafenib, ARQ 092 or the combination of ARQ 092 with sorafenib; (n=7/group) for 6 weeks. Tumor progression, size of tumors and the mean tumor number were significantly reduced by the combination treatment compared to the control or single treatments. This effect was associated with a significant increase in apoptotic response and reduction in proliferation and angiogenesis. Sirius red staining showed a decrease in liver fibrosis. Moreover, treatments improved immune response in blood and in tumor microenvironment. Thus, the combination of ARQ 092 with sorafenib potentiates inhibition of tumor progression and gives the possibility of therapeutic improvement for patients with advanced HCC.Article Citation - WoS: 29Citation - Scopus: 30Constraints on the Double-Parton Scattering Cross Section From Same-Sign W Boson Pair Production in Proton-Proton Collisions at ?s=8 Tev(Springer Verlag, 2018-02) CMS Collaboration; Karapınar, GülerA first search for same-sign WW production via double-parton scattering is performed based on proton-proton collision data at a center-of-mass energy of 8 TeV using dimuon and electron-muon final states. The search is based on the analysis of data corresponding to an integrated luminosity of 19.7 fb−1. No significant excess of events is observed above the expected single-parton scattering yields. A 95% confidence level upper limit of 0.32 pb is set on the inclusive cross section for same-sign WW production via the double-parton scattering process. This upper limit is used to place a 95% confidence level lower limit of 12.2 mb on the effective double-parton cross section parameter, closely related to the transverse distribution of partons in the proton. This limit on the effective cross section is consistent with previous measurements as well as with Monte Carlo event generator predictions.Article Citation - WoS: 54Citation - Scopus: 92Inclusive Search for a Highly Boosted Higgs Boson Decaying To a Bottom Quark-Antiquark Pair(American Physical Society, 2018-02) CMS Collaboration; Karapınar, GülerAn inclusive search for the standard model Higgs boson (H) produced with large transverse momentum (pT) and decaying to a bottom quark-antiquark pair (bb) is performed using a data set of pp collisions at s=13 TeV collected with the CMS experiment at the LHC. The data sample corresponds to an integrated luminosity of 35.9 fb-1. A highly Lorentz-boosted Higgs boson decaying to bb is reconstructed as a single, large radius jet, and it is identified using jet substructure and dedicated b tagging techniques. The method is validated with Z→bb decays. The Z→bb process is observed for the first time in the single-jet topology with a local significance of 5.1 standard deviations (5.8 expected). For a Higgs boson mass of 125 GeV, an excess of events above the expected background is observed (expected) with a local significance of 1.5 (0.7) standard deviations. The measured cross section times branching fraction for production via gluon fusion of H→bb with reconstructed pT>450 GeV and in the pseudorapidity range -2.5<η<2.5 is 74±48(stat)-10+17(syst) fb, which is consistent within uncertainties with the standard model prediction. © 2018 CERN.Article Citation - WoS: 23Citation - Scopus: 32Measurement of the Lambda(b) Polarization and Angular Parameters in Lambda(b) -> J/Psi Lambda Decays From Pp Collisions at Root S=7 and 8 Tev(American Physical Society, 2018-04) CMS Collaboration; Karapınar, GülerAn analysis of the bottom baryon decay Λb→J/ψ(→μ+μ-)Λ(→pπ-) is performed to measure the Λb polarization and three angular parameters in data from pp collisions at s=7 and 8 TeV, collected by the CMS experiment at the Large Hadron Collider. The Λb polarization is measured to be 0.00±0.06(stat)±0.06(syst) and the parity-violating asymmetry parameter is determined to be 0.14±0.14(stat)±0.10(syst). The measurements are compared to various theoretical predictions, including those from perturbative quantum chromodynamics.Article Citation - WoS: 34Citation - Scopus: 41Measurements of Tt¯ Cross Sections in Association With B Jets and Inclusive Jets and Their Ratio Using Dilepton Final States in Pp Collisions at S=13tev(Elsevier Ltd., 2018-01) CMS Collaboration; Karapınar, GülerThe cross sections for the production of tt¯bb¯ and tt¯jj events and their ratio σtt¯bb¯/σtt¯jj are measured using data corresponding to an integrated luminosity of 2.3 fb−1collected in pp collisions at s=13 TeV with the CMS detector at the LHC. Events with two leptons (e or μ) and at least four reconstructed jets, including at least two identified as b quark jets, in the final state are selected. In the full phase space, the measured ratio is 0.022±0.003(stat)±0.006(syst), the cross section σtt¯bb¯ is 4.0±0.6(stat)±1.3(syst) pb and σtt¯jj is 184±6(stat)±33(syst) pb. The measurements are compared with the standard model expectations obtained from a POWHEG simulation at next-to-leading-order interfaced with PYTHIA.Article Citation - WoS: 181Citation - Scopus: 284Observation of T¯th Production(American Physical Society, 2018-06) CMS Collaboration; Karapınar, GülerThe observation of Higgs boson production in association with a top quark-antiquark pair is reported, based on a combined analysis of proton-proton collision data at center-of-mass energies of s=7, 8, and 13 TeV, corresponding to integrated luminosities of up to 5.1, 19.7, and 35.9 fb-1, respectively. The data were collected with the CMS detector at the CERN LHC. The results of statistically independent searches for Higgs bosons produced in conjunction with a top quark-antiquark pair and decaying to pairs of W bosons, Z bosons, photons, τ leptons, or bottom quark jets are combined to maximize sensitivity. An excess of events is observed, with a significance of 5.2 standard deviations, over the expectation from the background-only hypothesis. The corresponding expected significance from the standard model for a Higgs boson mass of 125.09 GeV is 4.2 standard deviations. The combined best fit signal strength normalized to the standard model prediction is 1.26-0.26+0.31.Article Citation - WoS: 22Citation - Scopus: 24Pseudorapidity Distributions of Charged Hadrons in Proton-Lead Collisions at ?snn=5.02 and 8.16 Tev(Springer Verlag, 2018-01) CMS Collaboration; Karapınar, GülerThe pseudorapidity distributions of charged hadrons in proton-lead collisions at nucleon-nucleon center-of-mass energies sNN=5.02 and 8.16 TeV are presented. The measurements are based on data samples collected by the CMS experiment at the LHC. The number of primary charged hadrons produced in non-single-diffractive proton-lead collisions is determined in the pseudorapidity range |η lab | < 2.4. The charged-hadron multiplicity distributions are compared to the predictions from theoretical calculations and Monte Carlo event generators. In the center-of-mass pseudorapidity range |η cm | < 0.5, the average charged-hadron multiplicity densities 〈dN ch /dη cm 〉 |ηcm| < 0.5 are 17.31 ± 0.01 (stat) ± 0.59 (syst) and 20.10 ± 0.01 (stat) ± 0.85(syst) at sNN=5.02 and 8.16 TeV, respectively. The particle densities per participant nucleon are compared to similar measurements in proton-proton, proton-nucleus, and nucleus-nucleus collisions.Article Citation - WoS: 30Citation - Scopus: 32Search for Heavy Resonances Decaying To a Top Quark and a Bottom Quark in the Lepton+jets Final State in Proton–proton Collisions at 13 Tev(Elsevier Ltd., 2018-02) CMS Collaboration; Karapınar, GülerA search is presented for narrow heavy resonances decaying to a top quark and a bottom quark using data collected by the CMS experiment at s=13TeV in 2016. The data set analyzed corresponds to an integrated luminosity of 35.9fb−1. Final states that include a single lepton (e, μ), multiple jets, and missing transverse momentum are analyzed. No evidence is found for the production of a W′ boson, and the production of right-handed W′ bosons is excluded at 95% confidence level for masses up to 3.6TeV depending on the scenario considered. Exclusion limits for W′ bosons are also presented as a function of their coupling strength to left- and right-handed fermions. These limits on a W′ boson decaying via a top and a bottom quark are the most stringent published to date.Article Citation - WoS: 35Citation - Scopus: 93Search for Resonant and Nonresonant Higgs Boson Pair Production in the B B ¯final State in Proton-Proton Collisions at ?s=13 Tev(Springer Verlag, 2018-01) CMS Collaboration; Karapınar, GülerSearches for resonant and nonresonant pair-produced Higgs bosons (HH) decaying respectively into , through either W or Z bosons, and b b ¯ are presented. The analyses are based on a sample of proton-proton collisions at s=13 TeV, collected by the CMS experiment at the LHC, corresponding to an integrated luminosity of 35.9 fb −1 . Data and predictions from the standard model are in agreement within uncertainties. For the standard model HH hypothesis, the data exclude at 95% confidence level a product of the production cross section and branching fraction larger than 72 fb, corresponding to 79 times the standard model prediction. Constraints are placed on different scenarios considering anomalous couplings, which could affect the rate and kinematics of HH production. Upper limits at 95% confidence level are set on the production cross section of narrow-width spin-0 and spin-2 particles decaying to Higgs boson pairs, the latter produced with minimal gravity-like coupling.Article Citation - WoS: 3Citation - Scopus: 19Search for Supersymmetry in Events With at Least Three Electrons or Muons, Jets, and Missing Transverse Momentum in Proton-Proton Collisions at ?s=13 Tev(Springer Verlag, 2018) Karapınar, GülerA search for new physics is carried out in events with at least three electrons or muons in any combination, jets, and missing transverse momentum. Results are based on the sample of proton-proton collision data produced by the LHC at a center-of-mass energy of 13 TeV and collected by the CMS experiment in 2016. The data sample analyzed corresponds to an integrated luminosity of 35.9 fb−1. Events are classified according to the number of b jets, missing transverse momentum, hadronic transverse momentum, and the invariant mass of same-flavor dilepton pairs with opposite charge. No significant excess above the expected standard model background is observed. Exclusion limits at 95% confidence level are computed for four different supersymmetric simplified models with pair production of gluinos or third-generation squarks. In the model with gluino pair production, with subsequent decays into a top quark-antiquark pair and a neutralino, gluinos with masses smaller than 1610 GeV are excluded for a massless lightest supersymmetric particle. In the case of bottom squark pair production, the bottom squark masses are excluded up to 840 GeV for charginos lighter than 200 GeV. For a simplified model of heavy top squark pair production, the t ˜ 2mass is excluded up to 720, 780, or 710 GeV for models with an exclusive t ˜ 2→ t ˜ 1H decay, an exclusive t ˜ 2→ t ˜ 1Z decay, or an equally probable mix of those two decays. In order to provide a simplified version of the analysis for easier interpretation, a small set of aggregate signal regions also has been defined, providing a compromise between simplicity and analysis sensitivityArticle Citation - WoS: 42Citation - Scopus: 35Search for Supersymmetry in Proton-Proton Collisions at 13 Tev Using Identified Top Quarks(American Physical Society, 2018-01) CMS Collaboration; Karapınar, GülerA search for supersymmetry is presented based on proton-proton collision events containing identified hadronically decaying top quarks, no leptons, and an imbalance pTmiss in transverse momentum. The data were collected with the CMS detector at the CERN LHC at a center-of-mass energy of 13 TeV, and correspond to an integrated luminosity of 35.9 fb-1. Search regions are defined in terms of the multiplicity of bottom quark jet and top quark candidates, the pTmiss, the scalar sum of jet transverse momenta, and the mT2 mass variable. No statistically significant excess of events is observed relative to the expectation from the standard model. Lower limits on the masses of supersymmetric particles are determined at 95% confidence level in the context of simplified models with top quark production. For a model with direct top squark pair production followed by the decay of each top squark to a top quark and a neutralino, top squark masses up to 1020 GeV and neutralino masses up to 430 GeV are excluded. For a model with pair production of gluinos followed by the decay of each gluino to a top quark-antiquark pair and a neutralino, gluino masses up to 2040 GeV and neutralino masses up to 1150 GeV are excluded. These limits extend previous results.Article Citation - WoS: 35Citation - Scopus: 38Wetting of Chemically Heterogeneous Striped Surfaces: Molecular Dynamics Simulations(American Institute of Physics, 2018-06) Nguyen, Chinh Thanh; Barışık, Murat; Kim, BoHungUsing molecular dynamics simulations, we thoroughly investigated the wetting behaviors of a chemically heterogeneous striped substrate patterned with two different wetting materials, face-centered cubic gold and face-centered cubic silver. We analyzed the density distributions, normal stress distributions, surface tensions, and contact angles of a water droplet placed on the substrates at different heterogeneities. We found that the density and stress profile of the water droplet near the substrate-water interface were noticeably affected by altering the gold and silver contents in the substrate. Specifically, a greater portion of gold (more wetting) or smaller portion of silver (less wetting) in the substrate composition induced higher densities and higher normal stresses in the vicinity of the substrate surface. Also, it was observed that the surface tensions at liquid-vapor interface and solid-vapor interface were not largely impacted by the change of the substrate composition while the solid-liquid surface tension decreased exponentially with increasing fraction of gold. Most importantly, we found that contact angle of a nanometer-sized water droplet resting on the chemically heterogeneous striped substrate does not show linear dependence on corresponding surface fractions like that predicted by Cassie-Baxter model at the macro-scale. Consequently, we proposed a method for successfully predicting the contact angle by including the critical effects of the substrate heterogeneity on both surface tensions and line tension at the three-phase contact line of the water droplet and the chemically striped substrate.Article Citation - WoS: 28Citation - Scopus: 30Wigner Crystallization in Topological Flat Bands(IOP Publishing Ltd., 2018-06) Jaworowski, Blazej; Güçlü, Alev Devrim; Kaczmarkiewicz, Piotr; Kupczynski, Michal; Potasz, Pawel; Wójs, ArkadiuszWe study the Wigner crystallization on partially filled topological flat bands of kagome, honeycomb and checkerboard lattices. We identify the Wigner crystals (WCs) by analyzing the Cartesian and angular Fourier transform of the pair correlation density of the many-body ground state obtained using exact diagonalization. The crystallization strength, measured by the magnitude of the Fourier peaks, increases with decreasing particle density. The Wigner crystallization observed by us is a robust and general phenomenon, existing in all three lattice models for a broad range of filling factors and interaction parameters. The shape of the resulting WCs is determined by the boundary conditions of the chosen plaquette. It is to a large extent independent on the underlying lattice, including its topology, and follows the behavior of classical point particles.Article Citation - Scopus: 4Yeni Koronavirüs (Covid-19) Sürecinde Türkiye’de Üniversite Kütüphaneleri(2020) Cuhadar, Sami; Gürdal, Gültekin; Cimen, Ertugrul; Çanak, Tuba Akbaytürk; Gurdal, GultekinBu çalışmanın amacı Yeni Koronovirüs (COVID-19) nedeniyle binalarını kapatarak yüz yüze kullanıcı hizmetlerine ara vermek ya da askıya almak durumunda kalan üniversite kütüphanelerini tespit etmek, hizmetlerine devam edenlerin hizmetlerini hangi koşullarda, hangi sürelerle verdiğini belirlemek ve kütüphanelerin yeniden açılması durumunda yapılması gerekenler ile ilgili önerilerde bulunmaktır. Bu amacı bütünsel bir çerçevede yakalayabilmek için üniversite kütüphanelerinin farklı paydaşları olan yayıncıların, meslek örgütlerinin bu dönemdeki çalışmaları da küresel düzeyde incelenmiştir. Çalışmanın bir diğer amacı ise üniversite kütüphanelerinin altyapı, bütçe, koleksiyon, kullanıcı eğitimi, personel açısından uzaktan hizmet vermeye ne kadar hazır olduklarını, ani gelişen bu durum nedeniyle yaşanan sorunları tespit etmek ve sorunlar için çözüm önerileri sunmaktır. Çalışmanın temelini oluşturan veriler 209 (129 Devlet Üniversitesi, 75 Vakıf Üniversitesi, 5 Vakıf MYO) yükseköğretim kurumunun kütüphane yöneticilerine gönderilen anket sorularına verilen cevaplardan elde edilmiştir. Ankete 84 kurum katılmıştır. Anket sonuçları Surveey.com ve MS Excel ile analiz edilmiş ve görselleştirilmiştir.