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PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization 

Has, Canan; Allmer, Jens (Elsevier, 2017-04)
In parallel with the development of nucleotide sequencing an equally important interest in further describing the sequence in terms of function arose and the latter represents the current bottleneck in the overall research ...
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Systematic computational analysis of potential rnai regulation in toxoplasma gondii 

Çakır, Mehmet Volkan; Allmer, Jens (IEEE, 2010)
RNA interference (RNAi) is the mechanism through which RNA interferes with the production of other RNAs in a sequence specific manner. Micro RNA (miRNA) is a type of RNA which is transcribed as pri-miRNAs and processed to ...
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Relative protein quantitation with post translational modifications in mass spectrometry based proteomics 

Allmer, Jens (IEEE, 2010)
Mass spectrometry has become the tool of choice for most investigations in proteomics. Identification of proteins from complex mixtures has long been achieved and is now routinely used in countless high throughput studies. ...
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Computational methods for microRNA target prediction 

Hamzeiy, Hamid; Yousef, Malik; Allmer, Jens (Springer, 2014)
MicroRNAs (miRNAs) are important players in gene regulation. The final and maybe the most important step in their regulatory pathway is the targeting. Targeting is the binding of the miRNA to the mature RNA via the RNA-induced ...
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Computational and bioinformatics methods for microRNA gene prediction 

Allmer, Jens (Springer, 2014)
MicroRNAs (miRNAs) have attracted ever-increasing interest in recent years. Since experimental approaches for determining miRNAs are nontrivial in their application, computational methods for the prediction of miRNAs have ...
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Feature selection for microRNA target prediction comparison of one-class feature selection methodologies 

Yousef, Malik; Allmer, Jens; Khalifa, Waleed (SciTePress, 2016)
Traditionally, machine learning algorithms build classification models from positive and negative examples. Recently, one-class classification (OCC) receives increasing attention in machine learning for problems where the ...
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Comparison of four Ab initio MicroRNA prediction tools 

Saçar, Müşerref Duygu; Allmer, Jens (SciTePress, 2013)
MicroRNAs are small RNA sequences of 18-24 nucleotides in length, which serve as templates to drive post transcriptional gene silencing. The canonical microRNA pathway starts with transcription from DNA and is followed by ...



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Allmer, Jens (7)
Yousef, Malik (2)Hamzeiy, Hamid (1)Has, Canan (1)Khalifa, Waleed (1)Saçar, Müşerref Duygu (1)Çakır, Mehmet Volkan (1)Subject
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Mass spectrometry (2)MicroRNAs (2)MiRNA (2)RNA (2)Ab initio (1)Ab initio prediction (1)Chromatographic analysis (1)Classification (1)Comparison (1)... View MorePublication TypeconferenceObject (4)article (3)Languageeng (7)Publication CategoryKonferans Öğesi - Uluslararası - Kurum Öğretim Elemanı (4)Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı (3)Access Typeinfo:eu-repo/semantics/openAccess (7)Date Issued2010 (2)2014 (2)2013 (1)2016 (1)2017 (1)Has File(s)Yes (7)

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