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One step forward, two steps back; Xeno-MicroRNAs reported in breast milk are artifacts 

Bağcı, Caner; Allmer, Jens (Public Library of Science, 2016-01)
Background: MicroRNAs (miRNAs) are short RNA sequences that guide post-transcriptional regulation of gene expression via complementarity to their target mRNAs. Discovered only recently, miRNAs have drawn a lot of attention. ...
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Feature selection for microRNA target prediction comparison of one-class feature selection methodologies 

Yousef, Malik; Allmer, Jens; Khalifa, Waleed (SciTePress, 2016)
Traditionally, machine learning algorithms build classification models from positive and negative examples. Recently, one-class classification (OCC) receives increasing attention in machine learning for problems where the ...
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The impact of feature selection on one and two-class classification performance for plant microRNAs 

Khalifa, Waleed; Yousef, Malik; Saçar Demirci, Müşerref Duygu; Allmer, Jens (PeerJ Inc., 2016)
MicroRNAs (miRNAs) are short nucleotide sequences that form a typical hairpin structure which is recognized by a complex enzyme machinery. It ultimately leads to the incorporation of 18-24 nt long mature miRNAs into RISC ...
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Feature selection has a large impact on one-class classification accuracy for micrornas in plants 

Yousef, Malik; Saçar Demirci, Müşerref Duygu; Khalifa, Waleed; Allmer, Jens (Hindawi Publishing Corporation, 2016)
MicroRNAs (miRNAs) are short RNA sequences involved in posttranscriptional gene regulation. Their experimental analysis is complicated and, therefore, needs to be supplemented with computational miRNA detection. Currently ...
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Differential expression of toxoplasma gondii microRNAs in murine and human hosts 

Saçar Demirci, Müşerref Duygu; Bağcı, Caner; Allmer, Jens (Springer, 2016)
MicroRNAs are short RNA sequences involved in post-transcriptional gene regulation. MicroRNAs are known for a wide variety of species ranging from bacteria to plants. It has become clear that some cross-kingdom regulation ...

Database normalization is crucial for reliable protein identification in mass spectrometry-based proteomics 

Has, Canan; Mungan, Mehmet Direnç; Çiftci, Cansu; Allmer, Jens (Springer, 2016-02)
Research in proteomics is driven by mass spectrometry, especially the identification of proteins from complex samples. Computational analysis of the resulting data determines the peptide sequences of the recorded spectra ...

Preparing sequence databases for application in proteogenomics 

Has, Canan; Mungan, Mehmet Direnç; Çiftci, Cansu; Allmer, Jens (Springer, 2016-02)
[No abstract available]



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Allmer, Jens (7)
Khalifa, Waleed (3)Saçar Demirci, Müşerref Duygu (3)Yousef, Malik (3)Bağcı, Caner (2)Has, Canan (2)Mungan, Mehmet Direnç (2)Çiftci, Cansu (2)SubjectClassification (3)Machine learning (3)MicroRNAs (3)Feature selection (2)Arabidopsis thaliana (1)Bioinformatics (1)Breast milk (1)Gene expression regulation (1)Messenger RNA (1)MicroRNA targets (1)... View MorePublication Typearticle (3)conferenceObject (3)bookPart (1)Languageeng (7)Publication CategoryKonferans Öğesi - Uluslararası - Kurum Öğretim Elemanı (3)Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı (3)Kitap Bölümü - Uluslararası (1)Access Typeinfo:eu-repo/semantics/openAccess (6)info:eu-repo/semantics/closedAccess (1)Date Issued
2016 (7)
Has File(s)Yes (6)No (1)

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