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Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame 

Uncu, Ayşe Özgür; Gültekin, Visam; Allmer, Jens; Frary, Anne; Doğanlar, Sami (Crop Science Society of America, 2015)
Sesame (Sesamum indicum L. syn. Sesamum orientale L.) is an orphan crop species with most molecular genetic research work done in the last decade. In this study, we used a pyrosequencing approach for the development of ...
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Computational prediction of MicroRNAs from toxoplasma gondii potentially regulating the hosts' gene expression 

Saçar, Müşerref Duygu; Bağcı, Caner; Allmer, Jens (Elsevier, 2014-10)
MicroRNAs (miRNAs) were discovered two decades ago, yet there is still a great need for further studies elucidating their genesis and targeting in different phyla. Since experimental discovery and validation of miRNAs is ...
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Feature selection has a large impact on one-class classification accuracy for micrornas in plants 

Yousef, Malik; Saçar Demirci, Müşerref Duygu; Khalifa, Waleed; Allmer, Jens (Hindawi Publishing Corporation, 2016)
MicroRNAs (miRNAs) are short RNA sequences involved in posttranscriptional gene regulation. Their experimental analysis is complicated and, therefore, needs to be supplemented with computational miRNA detection. Currently ...
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Development of EST-SSR markers for diversity and breeding studies in opium poppy 

Şelale, Hatice; Çelik, İbrahim; Gültekin, Visam; Allmer, Jens; Doğanlar, Sami; Frary, Anne (Wiley-Blackwell, 2013-06)
All publicly available opium poppy expressed sequence tag (EST) sequences, totalling 20 885, were assembled into unigenes and examined for simple sequence repeats (SSRs). Nearly 19% of the 14 957 unigenes contained SSRs ...
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Computational methods for ab initio detection of microRNAs 

Allmer, Jens; Yousef, Malik (Frontiers Media, 2012)
MicroRNAs are small RNA sequences of 18-24 nucleotides in length, which serve as templates to drive post-transcriptional gene silencing. The canonical microRNA pathway starts with transcription from DNA and is followed by ...
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Can MiRBase provide positive data for machine learning for the detection of MiRNA hairpins? 

Saçar, Müşerref Duygu; Hamzeiy, Hamid; Allmer, Jens (Informationsmanagement in der Biotechnologie e.V., 2013)
Experimental detection and validation of miRNAs is a tedious, time-consuming, and expensive process. Computational methods for miRNA gene detection are being developed so that the number of candidates that need experimental ...
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Visualization and analysis of miRNAs implicated in Amyotrophic Lateral Sclerosis within gene regulatory pathways 

Hamzeiy, Hamid; Suluyayla, Rabia; Brinkrolf, Christoph; Janowski, Sebastian Jan; Hofestädt, Ralf; Allmer, Jens (2018)
MicroRNAs (miRNAs), approximately 22 nucleotides long, post-transcriptionally active gene expression regulators, play active roles in modulating cellular processes. Gene regulation and miRNA regulation are intertwined and ...
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Allmer, Jens (27)
Yousef, Malik (7)Doğanlar, Sami (6)Frary, Anne (6)Saçar Demirci, Müşerref Duygu (5)Göktay, Mehmet (3)Gültekin, Visam (3)Hamzeiy, Hamid (3)Khalifa, Waleed (3)Saçar, Müşerref Duygu (3)... View MoreSubjectMicroRNAs (13)Machine learning (6)Genetic diversity (4)Bioinformatics (3)Classification (3)Gene expression regulation (3)Genomic SSRs (3)Microsatellites (3)Computational biology (2)Feature selection (2)... View MorePublication Typearticle (27)submittedVersion (1)Languageeng (27)Publication Category
Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı (27)
Access Typeinfo:eu-repo/semantics/openAccess (26)info:eu-repo/semantics/closedAccess (1)Date Issued2014 (7)2017 (7)2013 (3)2016 (3)2018 (3)2015 (2)2010 (1)2012 (1)Has File(s)Yes (27)

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