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Computational and bioinformatics methods for microRNA gene prediction 

Allmer, Jens (Springer, 2014)
MicroRNAs (miRNAs) have attracted ever-increasing interest in recent years. Since experimental approaches for determining miRNAs are nontrivial in their application, computational methods for the prediction of miRNAs have ...
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Machine learning methods for microRNA gene prediction 

Saçar, Müşerref Duygu; Allmer, Jens (Humana Press, 2014)
MicroRNAs (miRNAs) are single-stranded, small, noncoding RNAs of about 22 nucleotides in length, which control gene expression at the posttranscriptional level through translational inhibition, degradation, adenylation, ...
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Feature selection has a large impact on one-class classification accuracy for micrornas in plants 

Yousef, Malik; Saçar Demirci, Müşerref Duygu; Khalifa, Waleed; Allmer, Jens (Hindawi Publishing Corporation, 2016)
MicroRNAs (miRNAs) are short RNA sequences involved in posttranscriptional gene regulation. Their experimental analysis is complicated and, therefore, needs to be supplemented with computational miRNA detection. Currently ...
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One step forward, two steps back; Xeno-MicroRNAs reported in breast milk are artifacts 

Bağcı, Caner; Allmer, Jens (Public Library of Science, 2016-01)
Background: MicroRNAs (miRNAs) are short RNA sequences that guide post-transcriptional regulation of gene expression via complementarity to their target mRNAs. Discovered only recently, miRNAs have drawn a lot of attention. ...
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Delineating the impact of machine learning elements in pre-microRNA detection 

Saçar Demirci, Müşerref Duygu; Allmer, Jens (PeerJ Inc., 2017)
Gene regulation modulates RNA expression via transcription factors. Posttranscriptional gene regulation in turn influences the amount of protein product through, for example, microRNAs (miRNAs). Experimental establishment ...
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Intersection of MicroRNA and gene regulatory networks and their implication in cancer 

Yousef, Malik; Trinh, Hung V.; Allmer, Jens (Bentham Science Publishers, 2014-09)
MicroRNAs (miRNAs) have attracted heightened attention for their role as post-transcriptional regulators of gene expression. It has become clear that miRNAs can both up- and downregulate protein expression. According to ...
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The impact of feature selection on one and two-class classification performance for plant microRNAs 

Khalifa, Waleed; Yousef, Malik; Saçar Demirci, Müşerref Duygu; Allmer, Jens (PeerJ Inc., 2016)
MicroRNAs (miRNAs) are short nucleotide sequences that form a typical hairpin structure which is recognized by a complex enzyme machinery. It ultimately leads to the incorporation of 18-24 nt long mature miRNAs into RISC ...
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Revealing genome-wide mRNA and microRNA expression patterns in leukemic cells highlighted “hsa-miR-2278” as a tumor suppressor for regain of chemotherapeutic imatinib response due to targeting STAT5A 

Tezcanlı Kaymaz, Burçin; Selvi Günel, Nur; Ceyhan, Metin; Bozok Çetintaş, Vildan; Özel, Buket; Kartal Yandım, Melis; Kıpçak, Sezgi; Aktan, Çağdaş; Adan Gökbulut, Aysun; Baran, Yusuf; Kosova Can, Buket (Springer, 2015-09)
BCR-ABL oncoprotein stimulates cell proliferation and inhibits apoptosis in chronic myeloid leukemia (CML). For cure, imatinib is a widely used tyrosine kinase inhibitor, but developing chemotherapeutic resistance has to ...
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Master regulators of posttranscriptional gene expression are subject to regulation 

Hamid, Syed Muhammad; Akgül, Bünyamin (Springer, 2014)
MicroRNAs (miRNAs) are small noncoding RNAs of 17-25 nt in length that control gene expression posttranscriptionally. As master regulators of posttranscriptional gene expression, miRNAs themselves are subject to tight ...
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AuthorAllmer, Jens (14)Saçar Demirci, Müşerref Duygu (6)Yousef, Malik (6)Akgül, Bünyamin (3)Khalifa, Waleed (3)Acar, İlhan Erkin (2)Baran, Yusuf (2)Hamzeiy, Hamid (2)Saçar, Müşerref Duygu (2)Adan Gökbulut, Aysun (1)... View MoreSubject
MicroRNAs (19)
Machine learning (6)Classification (3)Gene expression regulation (3)Apoptosis (2)Bioinformatics (2)Chronic myeloid leukemia (2)Computational biology (2)Feature selection (2)RNA (2)... View MorePublication Type
article (19)
acceptedVersion (1)submittedVersion (1)Languageeng (19)Publication CategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı (18)Makale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanı (1)Access Typeinfo:eu-repo/semantics/openAccess (19)Date Issued2014 (6)2016 (4)2017 (4)2013 (2)2018 (2)2015 (1)Full TextYes (19)

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