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Determining the C-terminal amino acid of a peptide from MS/MS data 

Allmer, Jens (Proteomass Scientific Society, 2013-12)
Proteomics is currently chiefly based on mass spectrometry (MS) which is the tool of choice to investigate proteins. Two computational approaches to derive the tandem mass spectrum precursor’s sequence are widely employed. ...
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Effect of molecular architecture on cell interactions and stealth properties of PEG 

Özer, İmran; Tomak, Aysel; Zareie, Hadi M.; Baran, Yusuf; Bulmuş, Volga (American Chemical Society, 2017-09)
PEGylation, covalent attachment of PEG to therapeutic biomolecules, in which suboptimal pharmacokinetic profiles limiting their therapeutic utility are of concern, is a widely applied technology. However, this technology ...
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Murine Sialidase Neu3 facilitates GM2 degradation and bypass in mouse model of Tay-Sachs disease 

Seyrantepe, Volkan; Akyıldız Demir, Seçil; Timur, Zehra Kevser; Von Gerichten, Johanna; Marsching, Christian; Erdemli, Esra; Öztaş, Emin; Takahashi, Kohta; Yamaguchi, Kazunori; Ateş, Nurselin; Dönmez Demir, Buket; Dalkara, Turgay; Erich, Katrin; Hopf, Carsten; Sandhoff, Roger; Miyagi, Taeko (Elsevier, 2018-01)
Tay-Sachs disease is a severe lysosomal storage disorder caused by mutations in Hexa, the gene that encodes for the α subunit of lysosomal β-hexosaminidase A (HEXA), which converts GM2 to GM3 ganglioside. Unexpectedly, ...
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The expressed MicroRNA-mRNA interactions of Toxoplasma gondii 

Acar, İlhan Erkin; Saçar Demirci, Müşerref Duygu; Groß, Uwe; Allmer, Jens (Frontiers Media S.A., 2018-01)
MicroRNAs (miRNAs) are involved in post-transcriptional modulation of gene expression and thereby have a large influence on the resulting phenotype. We have previously shown that miRNAs may be involved in the communication ...
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Deep sequencing reveals two Jurkat subpopulations with distinct miRNA profiles during camptothecin-induced apoptosis 

Erdoğan, İpek; Coşacak, Mehmet İlyas; Nalbant, Ayten; Akgül, Bünyamin (TUBITAK, 2018)
MicroRNAs (miRNAs) are small noncoding RNAs of about 19-25 nt that regulate gene expression posttranscriptionally under various cellular conditions, including apoptosis. The miRNAs involved in modulation of apoptotic events ...
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Biofabrication of in situ self assembled 3D cell cultures in a weightlessness environment generated using magnetic levitation 

Anıl İnevi, Müge; Yaman, Sena; Arslan Yıldız, Ahu; Meşe, Gülistan; Yalçın Özuysal, Özden; Tekin, Hüseyin Cumhur; Özçivici, Engin (Nature Publishing, 2018-12)
Magnetic levitation though negative magnetophoresis is a novel technology to simulate weightlessness and has recently found applications in material and biological sciences. Yet little is known about the ability of the ...
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Characterization of the BETA1 gene, which might play a role in Beta vulgaris subsp. Maritima salt tolerance 

Uysal, Özge; Çakıroğlu, Çiğdem; Koç, Ahmet; Karakaya, Hüseyin Çağlar (TÜBİTAK, 2017)
Salinity stress has a negative impact on plant growth, which affects homeostasis and productivity. The uptake of nonessential salt ions changes the osmotic balance of the cell and causes dehydration. Higher plants develop ...
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Secreted Wnt antagonists in leukemia: A road yet to be paved 

Pehlivan, Melek; Çalışkan, Ceyda; Yüce, Zeynep; Sercan, Hakkı Ogün (Elsevier, 2018-06)
Wnt signaling has been a topic of research for many years for its diverse and fundamental functions in physiological (such as embryogenesis, organogenesis, proliferation, tissue repair and cellular differentiation) and ...
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Sensitive and specific detection of ligands using engineered riboswitches 

Morse, Daniel P.; Nevins, Colin E.; Aggrey-Fynn, Joana Efua; Bravo, Rick J.; Pfaeffle, Herman O.I.; Laney, Jess E. (Elsevier, 2018-04)
Riboswitches are RNA elements found in non-coding regions of messenger RNAs that regulate gene expression through a ligand-triggered conformational change. Riboswitches typically bind tightly and specifically to their ...
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Transcriptomic analysis of boron hyperaccumulation mechanisms in Puccinellia distans 

Öztürk, Saniye Elvan; Göktay, Mehmet; Has, Canan; Babaoğlu, Mehmet; Allmer, Jens; Doğanlar, Sami; Frary, Anne (Elsevier, 2018-05)
Puccinellia distans, common alkali grass, is found throughout the world and can survive in soils with boron concentrations that are lethal for other plant species. Indeed, P. distans accumulates very high levels of this ...
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AuthorBaran, Yusuf (55)Frary, Anne (47)Doğanlar, Sami (40)Allmer, Jens (33)Koç, Ahmet (17)Doğan, İlhan (15)Özyiğit, İbrahim İlker (13)Çelik, İbrahim (11)Seyrantepe, Volkan (10)Adan Gökbulut, Aysun (9)... View MoreSubjectApoptosis (22)Chronic myeloid leukemia (19)MicroRNAs (19)Microsatellites (11)Genetic diversity (8)Imatinib (8)Yeast (8)Cancer cells (7)Drug resistance (7)Machine learning (7)... View MorePublication Type
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acceptedVersion (1)submittedVersion (1)Languageeng (237)tur (1)Publication CategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı (225)Makale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanı (13)Access Typeinfo:eu-repo/semantics/openAccess (225)info:eu-repo/semantics/closedAccess (13)Attribution 3.0 United States (1)Date Issued2017 (42)2014 (29)2011 (26)2016 (26)2015 (25)2013 (22)2018 (20)2019 (19)2010 (16)2012 (13)Full TextYes (237)No (1)

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