Browsing by Author Allmer, Jens


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Issue DateTitleAuthor(s)
2016A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing Virus GenomesDemirci, Müşerref Duygu Saçar; Toprak, Mustafa; Allmer, Jens
2014Machine learning methods for microRNA gene predictionSaçar, Müşerref Duygu; Allmer, Jens
Mar-2017MicroRNA categorization using sequence motifs and k-mersYousef, Malik; Khalifa, Waleed; Acar, İlhan Erkin; Allmer, Jens
Jun-2017Mining the Toxoplasma gondii genome for microRNA regulatory patternsAcar, İlhan Erkin
2014miRNomics: MicroRNA biology and computational analysis prefaceYousef, Malik; Allmer, Jens
Aug-2017Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea)Göl, Şurhan; Göktay, Mehmet; Allmer, Jens; Doğanlar, Sami ; Frary, Anne 
2012De novo markup language, a standard to represent de novo sequencing results from MS/MS dataTakan, Savaş; Allmer, Jens
Dec-2017On the performance of pre-microRNA detection algorithmsSaçar Demirci, Müşerref Duygu; Baumbach, Jan; Allmer, Jens
Jan-2016One step forward, two steps back; Xeno-MicroRNAs reported in breast milk are artifactsBağcı, Caner; Allmer, Jens
2016PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomesHas, Canan; Lashin, Sergey A.; Kochetov, Alexey; Allmer, Jens
Apr-2017PGMiner: Complete proteogenomics workflow; from data acquisition to result visualizationHas, Canan; Allmer, Jens
2016Preparing sequence databases for application in proteogenomicsHas, Canan; Mungan, Mehmet Direnç; Çiftçi, Cansu; Allmer, Jens
2012Quality assessment of de novo sequence assembly toolsGültekin, Visam
2013Ranking tandem mass spectra: And the impact of database size and scoring function on peptide spectrum matchesHas, Canan; Kundakçı, Cemal Ulaş; Altay, Aybuge; Allmer, Jens
Jul-2012Ray: A profile-based approach for homology matching of tandem-ms spectra to sequence databasesYılmaz, Şule
2010Relative protein quantitation with post translational modifications in mass spectrometry based proteomicsAllmer, Jens
2012Removing contamination from genomic sequences based on vector reference librariesBağcı, Caner; Allmer, Jens
2009Systematic computational analysis of potential RNA interference regulation in Toxoplasma gondiiÇakır, Mehmet Volkan
2010Systematic computational analysis of potential rnai regulation in toxoplasma gondiiÇakır, Mehmet Volkan; Allmer, Jens
May-2018Transcriptomic analysis of boron hyperaccumulation mechanisms in Puccinellia distansÖztürk, Saniye Elvan; Göktay, Mehmet; Has, Canan; Babaoğlu, Mehmet; Allmer, Jens; Doğanlar, Sami ; Frary, Anne