Browsing by Author Allmer, Jens


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Issue DateTitleAuthor(s)
2013Data mining for microrna gene prediction: On the impact of class imbalance and feature number for microrna gene predictionSaçar, Müşerref Duygu; Allmer, Jens
2016Database normalization is crucial for reliable protein identification in mass spectrometry-based proteomicsHas, Canan; Mungan, Mehmet Direnç; Çiftçi, Cansu; Allmer, Jens
2017Delineating the impact of machine learning elements in pre-microRNA detectionSaçar Demirci, Müşerref Duygu; Allmer, Jens
Dec-2013Determining the C-terminal amino acid of a peptide from MS/MS dataAllmer, Jens
Jun-2013Development of EST-SSR markers for diversity and breeding studies in opium poppyŞelale, Hatice; Çelik, İbrahim; Gültekin, Visam; Allmer, Jens; Doğanlar, Sami ; Frary, Anne 
Feb-2017Development of genomic simple sequence repeat markers in faba bean by next-generation sequencingAbuzayed, Mazen A.; Göktay, Mehmet; Allmer, Jens; Doğanlar, Sami ; Frary, Anne 
Aug-2014Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencingÇelik, İbrahim; Gültekin, Visam; Allmer, Jens; Doğanlar, Sami ; Frary, Anne 
2018Development of simple sequence repeat markers in hazelnut (Corylus avellana L.) by next-generation sequencing and discrimination of Turkish hazelnut cultivarsÖzturk, Süleyman Can; Göktay, Mehmet; Allmer, Jens; Doğanlar, Sami ; Frary, Anne 
2016Differential expression of toxoplasma gondii microRNAs in murine and human hostsSaçar Demirci, Müşerref Duygu; Bağcı, Caner; Allmer, Jens
2017Distinguishing between MicroRNA targets from diverse species using sequence motifs and K-mersYousef, Malik; Khalifa, Waleed; Acar, İlhan Erkin; Allmer, Jens
2020DNMSO; an ontology for representing de novo sequencing results from Tandem-MS dataTakan, Savaş; Allmer, Jens
2009Enabling the quantitation of post translational modificationsAllmer, Jens
Dec-2016Enhancement and validation of current human genome annotation via novel proteogenomics algorithmsHas, Canan
Sep-2014EPO mediates neurotrophic, neuroprotective, anti-oxidant, and anti-apoptotic effects via downregulation of miR-451 and miR-885-5p in SH-SY5Y neuron-like cellsAlural, Begüm; Duran, Gizem Ayna; Tüfekçi, Kemal Uğur; Allmer, Jens; Onkal, Zeynep; Tunalı, Doğa; Genç, Kürşad; Genç, Şermin
2011Evaluation of protein secondary structure prediction algorithms on a new advanced benchmark datasetHas, Canan
Jan-2012Existing bioinformatics tools for the quantitation of post-translational modificationsAllmer, Jens
2011Exploiting fragment-ion complementarity for peptide de novo sequencing from collision induced dissociation tandem mass spectraAytun, Belgin
Jan-2018The expressed MicroRNA-mRNA interactions of Toxoplasma gondiiAcar, İlhan Erkin; Saçar Demirci, Müşerref Duygu; Groß, Uwe; Allmer, Jens
2016Feature selection for microRNA target prediction comparison of one-class feature selection methodologiesYousef, Malik; Allmer, Jens; Khalifa, Waleed
2016Feature selection has a large impact on one-class classification accuracy for micrornas in plantsYousef, Malik; Demirci, Müşerref Duygu Saçar; Khalifa, Waleed; Allmer, Jens