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| Issue Date | Title | Author(s) |
| 2013 | 2-D thresholding of the connectivity map following the multiple sequence alignments of diverse datasets | Doğan, Tunca; Karaçalı, Bilge |
| 2023 | Algıda gecikme ve kısa-ömürlü senkronizasyon temelli yeni bir hayali motor aktivite tanıma yaklaşımı | Olcay, B. Orkan ; Karaçalı, Bilge |
| 2016 | Annealing-based model-free expectation maximisation for multi-colour flow cytometry data clustering | Köktürk, Başak Esin; Karaçalı, Bilge |
| 2014 | Automated labeling of cancer textures in larynx histopathology slides using quasi-supervised learning | Önder, Devrim; Sarıoğlu, Sülen; Karaçalı, Bilge |
| Apr-2013 | Automated labelling of cancer textures in colorectal histopathology slides using quasi-supervised learning | Önder, Devrim; Sarıoğlu, Sülen; Karaçalı, Bilge |
| 2012 | Automatic identification of abnormal regiones in digitized histology cross-sections of colonic tissues and adenocarcinomas using quasi-supervised learning | Önder, Devrim |
| 2012 | Automatic identification of evolutionary and sequence relationships in large scale protein data using computational and graph-theoretical analyses | Doğan, Tunca |
| Sep-2013 | Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences | Doğan, Tunca; Karaçalı, Bilge |
| Dec-2014 | A community computational challenge to predict the activity of pairs of compounds | Bansal, Mukesh; Yang, Jichen; Karan, Charles; Menden, Michael P.; Costello, James C.; Tang, Hao; Xiao, Guanghua; Li, Yajuan; Allen, Jeffrey; Zhong, Rui; Chen, Beibei; Kim, Minsoo; Wang, Tao; Heiser, Laura M.; Realubit, Ronald; Mattioli, Michela; Alvarez, Mariano J.; Shen, Yao; NCI-DREAM Community; Karaçalı, Bilge ; Gallahan, Daniel; Singer, Dinah; Saez-Rodriguez, Julio; Xie, Yang; Stolovitzky, Gustavo; Califano, Andrea |
| Dec-2014 | A community effort to assess and improve drug sensitivity prediction algorithms | Costello, James C.; Heiser, Laura M.; Georgii, Elisabeth; Gönen, Mehmet; Menden, Michael P.; Wang, Nicholas J.; Bansal, Mukesh; Ammad-ud-din, Muhammad; Hintsanen, Petteri; Khan, Suleiman A.; Mpindi, John-Patrick; Kallioniemi, Olli; Honkela, Antti; Aittokallio, Tero; Wennerberg, Krister; NCI-DREAM Community; Karaçalı, Bilge ; Collins, James J.; Gallahan, Dan; Singer, Dinah; Saez-Rodriguez, Julio; Kaski, Samuel; Gray, Joe W.; Stolovitzky, Gustavo |
| Dec-2018 | A comparative analysis of coherence measures for electroencephalography | Çağdaş, Serhat |
| Jan-2015 | A computational analysis of Turkish makam music based on a probabilistic characterization of segmented phrases | Bozkurt, Barış ; Karaçalı, Bilge |
| Nov-2017 | Constructing reference datasets for evaluating automated compensation algorithms in multicolor flow cytometry | Arslan, Nurhan |
| 2010 | Detection of man-made structures in aerial imagery using quasi-supervised learning and texture features | Güven, Mesut |
| Jul-2017 | Development of a unified analysis framework for multicolor flow cytometry data based on quasi-supervised learning | Köktürk Güzel, Başak Esin |
| 2012 | Dijital sitolojide kanser tanıma için analitik ve öngörüsel yarı-güdümlü öğrenme | Karaçalı, Bilge |
| 2010 | Doğrusal olmayan gömme teknikleri altında gen dizilerinin evrimsel i̇lişkileri | Doğan, Tunca; Karaçalı, Bilge |
| 2016 | EEG verisinde kanallar-arası zaman uyumluluk profilleri kullanılarak hayali hareket tanıma | Olcay, Bilal Orkan ; Özgören, Murat; Karaçalı, Bilge |
| May-2016 | An efficient algorithm for large-scale quasi-supervised learning | Karaçalı, Bilge |
| 2012 | Elektroensefalografi verilerinin yarı-güdümlü öğrenme ile otomatik olarak işaretlenmesi | Köktürk, Başak Esin; Karaçalı, Bilge |
